miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|75459553|gb|DT767876.1|DT767876 CCAGTACCCTAAACTCTCTTCTTCTCAAAAAATTAACAATGGCTTCAATGACTACTGCTTTCACTTCTCATCTTTCTTCC
AAAATCAAAACCCCTTTCTTAGATAACCAATCATCTTTCCATGTCACTCCATCTCGCATCCAACTCACTCGTTCATCTTC
CCCAAACACTCACATCACCATGTCTTCGTCATCATCATCATCATCTTCATCTTATGATCTATCTTCCTTCAAATTTGAAC
CAATTAAGGAATCCATTGTATCACGTGAGATGACTCGCAGATACATGATGGATATGATTACATATGCTGACACTGATGTT
GTTGTTGTTGGAGCAGGTTCAGCAGGTCTTTCTTGTGCTTATGAAATGAGCAAAAACCCTAACATCAACATCGCTATTAT
CGAACAATCTGTCAGTCCTGGTGGTGGTGCTTGGTTAGGCGGTCAGCTTTTTTCTGCCATGGTTGTTCGCAAACCTGCTC
ACATCTTCCTTGATGAACTCGGTGTTGAATACGATGAACAAGACACCTATGTTGTTATCAAGCACGCTGCCTTGTTTACA
TCCACAATCATGTCTAAGCTTTTGGCTAAACCAAATGTGAAACTTTTTAATGCTGTTGCTGCTGAGGATTTGATCGTGAA
AGAAGGTAAAGTTGCTGGGGTTGTCACAAATTGGGCTTTGGTTTCTATGAATCATGATACACAATCATGTATGGATCCAA
ATGTAATGGAAGCTAAGATTGTTGTCAGTTCTTGTGGCCATGATGGTCCTTTTGGTGCTACTGGTGTGAAGAGGCTGAGA
GCATTGGAATGATTGATTCTGTTCCTGGTATGAAAGCTCTTGATATGATACTGCTGAGGATGCTATTGTCAGA




Most similar to sp|O23787|THI4_CITSI

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|O23787|THI4_CITSI Thiazole biosynthetic enzyme, chloroplastic
           OS=Citrus sinensis GN=THI1 PE=2 SV=1
          Length = 356

 Score =  356 bits (914), Expect(2) = e-100
 Identities = 190/257 (73%), Positives = 202/257 (78%), Gaps = 2/257 (0%)
 Frame = +3

Query: 39  MASM-TTAFTSHLSSKIKTPFLDNQSSFHVTPSRIQLTRXXXXXXXXXXXXXXXXXXXXX 215
           MA+M +TAF   +SS     F    SSFH  P    L R                     
Sbjct: 1   MAAMASTAFAPSVSSTTNKLF---DSSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPP 57

Query: 216 XXXX-FKFEPIKESIVSREMTRRYMMDMITYADTDXXXXGAGSAGLSCAYEMSKNPNINI 392
                FKF+PIKESIVSREMTRRYM DMITYADTD    GAGSAGLSCAYE+SKNPNI I
Sbjct: 58  YDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQI 117

Query: 393 AIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGVEYDEQDTYVVIKHAALFTSTIM 572
           AIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELG++YDEQD YVVIKHAALFTSTIM
Sbjct: 118 AIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIM 177

Query: 573 SKLLAKPNVKLFNAVAAEDLIVKEGKVAGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSS 752
           SKLLA+PNVKLFNAVAAEDLIVK G+V GVVTNWALVSMNHDTQSCMDPNVMEAK+VVSS
Sbjct: 178 SKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSS 237

Query: 753 CGHDGPFGATGVKRLRA 803
           CGHDGPFGATGVKRL++
Sbjct: 238 CGHDGPFGATGVKRLKS 254



 Score = 32.3 bits (72), Expect(2) = e-100
 Identities = 14/17 (82%), Positives = 16/17 (94%)
 Frame = +2

Query: 797 ESIGMIDSVPGMKALDM 847
           +SIGMI+ VPGMKALDM
Sbjct: 253 KSIGMIEEVPGMKALDM 269


>sp|Q38709|THI4_ALNGL Thiazole biosynthetic enzyme, chloroplastic
           OS=Alnus glutinosa GN=THI4 PE=2 SV=1
          Length = 352

 Score =  340 bits (872), Expect(2) = 3e-96
 Identities = 167/192 (86%), Positives = 179/192 (93%)
 Frame = +3

Query: 228 FKFEPIKESIVSREMTRRYMMDMITYADTDXXXXGAGSAGLSCAYEMSKNPNINIAIIEQ 407
           F F+PIKESIVSREMTRRYMMDMITYADTD    GAGS+GL C YE+SKNP++ +AIIEQ
Sbjct: 60  FTFDPIKESIVSREMTRRYMMDMITYADTDVVVVGAGSSGLVC-YELSKNPSVQVAIIEQ 118

Query: 408 SVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGVEYDEQDTYVVIKHAALFTSTIMSKLLA 587
           SVSPGGGAWLGGQLFS MVVRKPAH+FLDELG+EYDEQD YVVIKHAALFTSTIMSKLLA
Sbjct: 119 SVSPGGGAWLGGQLFSGMVVRKPAHLFLDELGIEYDEQDNYVVIKHAALFTSTIMSKLLA 178

Query: 588 KPNVKLFNAVAAEDLIVKEGKVAGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 767
           +PNVKLFNAVAAEDLIVK G+V GVVTNWALVSMNHDTQSCMDPNVMEAK+VVSSCGHDG
Sbjct: 179 RPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 238

Query: 768 PFGATGVKRLRA 803
           PFGATGVK LR+
Sbjct: 239 PFGATGVKSLRS 250



 Score = 33.9 bits (76), Expect(2) = 3e-96
 Identities = 15/16 (93%), Positives = 16/16 (100%)
 Frame = +2

Query: 800 SIGMIDSVPGMKALDM 847
           SIGMID+VPGMKALDM
Sbjct: 250 SIGMIDTVPGMKALDM 265


>sp|Q38814|THI4_ARATH Thiazole biosynthetic enzyme, chloroplastic
           OS=Arabidopsis thaliana GN=THI1 PE=1 SV=1
          Length = 349

 Score =  337 bits (865), Expect(2) = 2e-95
 Identities = 164/192 (85%), Positives = 178/192 (92%)
 Frame = +3

Query: 228 FKFEPIKESIVSREMTRRYMMDMITYADTDXXXXGAGSAGLSCAYEMSKNPNINIAIIEQ 407
           F F+PIKESIVSREMTRRYM DMITYA+TD    GAGSAGLS AYE+SKNPN+ +AIIEQ
Sbjct: 56  FTFDPIKESIVSREMTRRYMTDMITYAETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQ 115

Query: 408 SVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGVEYDEQDTYVVIKHAALFTSTIMSKLLA 587
           SVSPGGGAWLGGQLFSAM+VRKPAH+FLDE+GV YDEQDTYVV+KHAALFTSTIMSKLLA
Sbjct: 116 SVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHAALFTSTIMSKLLA 175

Query: 588 KPNVKLFNAVAAEDLIVKEGKVAGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 767
           +PNVKLFNAVAAEDLIVK  +V GVVTNWALV+ NH TQSCMDPNVMEAKIVVSSCGHDG
Sbjct: 176 RPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDG 235

Query: 768 PFGATGVKRLRA 803
           PFGATGVKRL++
Sbjct: 236 PFGATGVKRLKS 247



 Score = 33.5 bits (75), Expect(2) = 2e-95
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = +2

Query: 797 ESIGMIDSVPGMKALDM 847
           +SIGMID VPGMKALDM
Sbjct: 246 KSIGMIDHVPGMKALDM 262


>sp|Q41738|THI41_MAIZE Thiazole biosynthetic enzyme 1-1,
           chloroplastic OS=Zea mays GN=THI1-1 PE=2 SV=1
          Length = 354

 Score =  335 bits (859), Expect(2) = 8e-94
 Identities = 163/191 (85%), Positives = 177/191 (92%)
 Frame = +3

Query: 228 FKFEPIKESIVSREMTRRYMMDMITYADTDXXXXGAGSAGLSCAYEMSKNPNINIAIIEQ 407
           F+F PIKESIVSREMTRRYM DMITYADTD    GAGSAGLSCAYE+SK+P ++IAI+EQ
Sbjct: 62  FRFSPIKESIVSREMTRRYMTDMITYADTDVVIVGAGSAGLSCAYELSKDPAVSIAIVEQ 121

Query: 408 SVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGVEYDEQDTYVVIKHAALFTSTIMSKLLA 587
           SVSPGGGAWLGGQLFSAMVVRKPAH+FLDELGV YDE + YVVIKHAALFTST+MS LLA
Sbjct: 122 SVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVAYDEAEDYVVIKHAALFTSTVMSLLLA 181

Query: 588 KPNVKLFNAVAAEDLIVKEGKVAGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 767
           +PNVKLFNAVA EDLIV+ G+V GVVTNWALVSMNHDTQSCMDPNVMEAK+VVSSCGHDG
Sbjct: 182 RPNVKLFNAVAVEDLIVRGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 241

Query: 768 PFGATGVKRLR 800
           PFGATGVKRL+
Sbjct: 242 PFGATGVKRLQ 252



 Score = 30.8 bits (68), Expect(2) = 8e-94
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = +2

Query: 797 ESIGMIDSVPGMKALDM 847
           + IGMI +VPGMKALDM
Sbjct: 252 QDIGMISAVPGMKALDM 268


>sp|Q41739|THI42_MAIZE Thiazole biosynthetic enzyme 1-2,
           chloroplastic OS=Zea mays GN=THI1-2 PE=2 SV=1
          Length = 354

 Score =  334 bits (856), Expect(2) = 2e-93
 Identities = 159/191 (83%), Positives = 178/191 (93%)
 Frame = +3

Query: 228 FKFEPIKESIVSREMTRRYMMDMITYADTDXXXXGAGSAGLSCAYEMSKNPNINIAIIEQ 407
           F+F PIKESIVSREMTRRYM DMIT+ADTD    GAGSAGLSCAYE+SK+P +++AI+EQ
Sbjct: 59  FRFSPIKESIVSREMTRRYMTDMITHADTDVVIVGAGSAGLSCAYELSKDPTVSVAIVEQ 118

Query: 408 SVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGVEYDEQDTYVVIKHAALFTSTIMSKLLA 587
           SVSPGGGAWLGGQLFSAMVVR+PAH+FLDELGV YDE + YVV+KHAALFTST+MS+LLA
Sbjct: 119 SVSPGGGAWLGGQLFSAMVVRRPAHLFLDELGVGYDEAEDYVVVKHAALFTSTVMSRLLA 178

Query: 588 KPNVKLFNAVAAEDLIVKEGKVAGVVTNWALVSMNHDTQSCMDPNVMEAKIVVSSCGHDG 767
           +PNVKLFNAVA EDLIV+ G+V GVVTNWALVSMNHDTQSCMDPNVMEAK+VVSSCGHDG
Sbjct: 179 RPNVKLFNAVAVEDLIVRRGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 238

Query: 768 PFGATGVKRLR 800
           PFGATGVKRL+
Sbjct: 239 PFGATGVKRLQ 249



 Score = 30.8 bits (68), Expect(2) = 2e-93
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = +2

Query: 797 ESIGMIDSVPGMKALDM 847
           + IGMI +VPGMKALDM
Sbjct: 249 QDIGMISAVPGMKALDM 265


>sp|P40998|THI2_SCHPO Thiazole biosynthetic enzyme, mitochondrial
           OS=Schizosaccharomyces pombe (strain ATCC 38366 / 972)
           GN=thi2 PE=2 SV=2
          Length = 328

 Score =  259 bits (661), Expect = 2e-68
 Identities = 130/196 (66%), Positives = 156/196 (79%), Gaps = 6/196 (3%)
 Frame = +3

Query: 228 FKFEPIKESIVSREMTRRYMMDMITYADTDXXXXGAGSAGLSCAYEM-SKNPNINIAIIE 404
           F F PI+ES VSR MTRRY  D+  YA++D    GAGSAGL+ AY + ++ P++ IAIIE
Sbjct: 49  FSFAPIRESTVSRAMTRRYFSDLDKYAESDIVIVGAGSAGLTAAYYIGTRRPDLKIAIIE 108

Query: 405 QSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGVEYDEQDTYVVIKHAALFTSTIMSKLL 584
            SV+PGGGAWLGGQLFSAMVVRKPA +FL+E+GV Y+++  YVV+KHAALFTST+M++ L
Sbjct: 109 ASVAPGGGAWLGGQLFSAMVVRKPADLFLNEIGVPYEDEGDYVVVKHAALFTSTVMARTL 168

Query: 585 AKPNVKLFNAVAAEDLIVKEGK-----VAGVVTNWALVSMNHDTQSCMDPNVMEAKIVVS 749
           A PNVKLFNA A EDLIVKEGK     +AGVVTNW LVS+NH  QSCMDPN + A +VVS
Sbjct: 169 ALPNVKLFNATAVEDLIVKEGKDGKQRIAGVVTNWTLVSLNHGLQSCMDPNTINAHLVVS 228

Query: 750 SCGHDGPFGATGVKRL 797
           + GHDGPFGA  VKRL
Sbjct: 229 ATGHDGPFGAFCVKRL 244